Zhang Laboratory

Structural Biology, Immunology and Pathogen-Host Interactions

The Zhang Lab uses cryo-EM and biochemistry to study how the immune system responds to various disease conditions, including pathogen infection, cancer and metabolic disorders.

The immune system exists in a delicate equilibrium. It must protect the body by identifying, combating and clearing pathogens, cancer cells and dead cells. At the same time, it must carefully orchestrate its individual components to guard against overactivity and prevent damage to healthy tissues. Failures in immune processes can result in inflammatory conditions and autoimmune disorders. Likewise, infections and diseases such as cancer evoke significant immune responses, which can dysregulate the system’s careful balance and result in chronic, damaging inflammation.

One of our interests is to understand inflammasome pathways, from inflammasome activation to pyroptotic cell death, with the goal of translating our findings into novel drugs for infections, chronic inflammation and cancer. Using cutting-edge structural biology techniques, our earlier work elucidated key facets of the NAIP/NLRC4 inflammasome, which comprises multiprotein complexes that trigger inflammatory responses during an immune reaction. The lab’s research in this area is ongoing. We utilize cell biology, genetics and bioinformatics — in combination with structural biology — to systematically study the mechanisms of inflammasomal proteins and their functions in the innate immune system.

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  • 121 peer-reviewed papers published in 2023
  • 62 peer-reviewed papers published in high-impact journals in 2023
  • 55 clinical trials launched to date

Liman Zhang, Ph.D.

Associate Professor, Department of Structural Biology

Areas of Expertise

Structural biology, cryo-EM, immunology, pathogen-host interactions, inflammasome

Biography

Dr. Liman Zhang is a structural biologist who studies how the immune system responds to infection and cancer.

She earned her B.S. in biotechnology from Jilin University and her Ph.D. in biochemistry from the National Institute of Biological Sciences, Beijing (NIBS). She then completed a postdoctoral fellowship at Harvard Medical School and Boston Children’s Hospital.

In 2020, she established her lab at Oregon Health & Science University, where she built a research program that explored the molecular mechanisms underlying immunological processes. Her expertise in cryo-EM and biochemistry revealed critical new insights into the NAIP/NLRC4 inflammasome, which comprises multiprotein complexes that trigger inflammatory responses during an immune reaction.

In 2024, she joined Van Andel Institute’s Department of Structural Biology as an associate professor.

She has received several awards for her work, including the 2023 Outstanding Research Faculty Award (Chemical Physiology and Biochemistry Department) from Oregon Health & Science University, a Medical Research Foundation New Investigator Award, a prestigious K99/R00 Pathway to Independence Award from the National Institute of Allergy and Infectious Diseases of the National Institutes of Health and a Cancer Research Institute Postdoctoral Training Fellowship.

Selected Publications

For a full list of Dr. Zhang’s publications, please visit PubMed.

2023

Paidimuddala B, Cao J, Zhang L. 2023. Structural basis for flagellin induced NAIP5 activation. Sci Adv 9(49).

Paidimuddala B*, Cao J*, Nash G, Xie Q, Wu H, Zhang L. 2023. Mechanism of NAIP/NLRC4 inflammasome activation revealed by cryo-EM structure of unliganded NAIP5. Nat Struct Mol Biol 30: 159–166.
*Co-first authors

2022

Cao J, Nash G, Zhang L. 2022. Structural mechanisms of inflammasome regulation revealed by cryo-EM studies. Curr Opin Struct Biol 75:102390.

Nash G, Paidimuddala B, Zhang L. 2022. Structural aspects of the MHC expression control system. Biophys Chem 284:106781.

2020

2018

Zhang L, Wu H. 2018. Bad germs are trapped. Cell Res 28(2): 141–142.

Yang X, Yang F, Wang W, Lin G, Hu Z, Han Z, Qi Y, Zhang L, Wang J, Sui S-F, Chai J. 2018. Structural basis for specific flagellin recognition by the NLR protein NAIP5. Cell Res 28:35–47.

2016

Zhang L*, Wu C*, Cai G, Chen S, Ye K. 2016. Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunit in yeast. Genes Dev 30:718–732.
* Co-first authors

2015

Zhang L*, Chen S*, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H. 2015. Cryo-EM structure of the activated NAIP2/NLRC4 inflammasome reveals nucleated polymerization. Science 350:404–409.
* Co-first authors

Hauenstein AV*, Zhang L*, Wu H. 2015. The hierarchical structural architecture of inflammasomes, supramolecular inflammatory machines. Curr Opin Struct Biol 31: 75 –83.
* Co-first authors

2013

Zhang L, Lin J, Ye K. 2013. Structural and functional analysis of the U3 snoRNA binding protein Rrp9. RNA 19: 701–711.

2011

Lin J*, Zhang L*, Lai S, Ye K. 2011. Structure and molecular evolution of CDGSH iron-sulfur domains. PLoS One 6: e24790.
* Co-first authors

Lin J, Lai S, Jia R, Xu A, Zhang L, Lu J, Ye K. 2011. Structural basis for site-specific ribose methylation by box C/D RNA protein complexes. Nature 469: 559–563.

2009

Ye K, Jia R, Lin J, Ju M, Peng J, Xu A, Zhang L. 2009. Structural organization box C/D RNA-guided RNA methyltransferase. Proc Natl Acad Sci U S A 106: 13808–13813.

Nancy Duchaine

Senior Administrative Assistant I, Department of Structural Biology

Jessie Guo, Ph.D.

Lab Manager, Department of Structural Biology

Nicole Marcia Horne

Assistant Research Technician, Department of Structural Biology

Taihao Yang, Ph.D.

Postdoctoral Fellow, Zhang Laboratory